Integrative RNA-Seq & Clinical Data Analysis
- Objective
- Link transcriptomic signatures to clinical phenotypes to surface candidate prognostic biomarkers.
- Methods
- QC → alignment (STAR) → quantification (Salmon) → DESeq2 differential expression → clinical covariate modelling.
- Tools
- STARSalmonDESeq2RPython
- Expected Outcomes
- Ranked differentially expressed genes correlated with clinical outcome and enriched pathways.